Basic Information
Locus ID:
BniB05g030930.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UPL4
Description:
Ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 15294399 | 15300689 | - | BniB05g030930.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 166,454.17 Da | 52.04 | 91.23 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1110 | 1497 | 1.71421E-126 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1156 | 1499 | 4.8E-86 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 110 | 541 | 1.97E-36 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1103 | 1492 | 6.67E-99 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1054 | 1271 | 6.6E-38 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1383 | 1497 | 6.3E-35 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 95 | 545 | 3.7E-51 | IPR011989 |
| SMART | SM00185 | arm_5 | 430 | 471 | 38.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 267 | 305 | 110.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 224 | 264 | 29.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1122 | 1499 | 7.0E-103 | IPR000569 |
| SMART | SM00185 | arm_5 | 310 | 355 | 220.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1124 | 1499 | 66.162819 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1084 | 1100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 877 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 831 | 853 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_018470055.1 | PREDICTED: E3 ubiquitin-protein ligase UPL4 [Raphanus sativus] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7VFZ7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021862 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology