Basic Information
Locus ID:
BniB05g030780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 15225564 | 15226637 | + | BniB05g030780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 32,838.18 Da | 51.90 | 68.37 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 239 | 279 | 1.96554E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 237 | 284 | 2.7E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 284 | 2.32E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 229 | 288 | 4.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 240 | 278 | 2.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 240 | 279 | 11.22052 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 43 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018451551.1 | PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Raphanus sativus] | 0 |
| Q9LYW5 | Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana OX=3702 GN=LUL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0KVM5 | RING-type E3 ubiquitin transferase OS=Raphanus sativus OX=3726 GN=LOC108822859 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology