Basic Information
Locus ID:
BniB05g028970.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 14229293 | 14230053 | - | BniB05g028970.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 23,315.82 Da | 47.76 | 77.22 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 87 | 139 | 1.20439E-11 | - |
| Pfam | PF12906 | RING-variant domain | 87 | 138 | 3.2E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 140 | 1.98E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 144 | 2.5E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 86 | 139 | 2.6E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 79 | 145 | 17.906355 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_013718872.1 | uncharacterized protein BNAANNG01510D [Brassica napus] | 0 |
| TrEMBL | A0A8X8AQL6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021707 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology