Basic Information
Locus ID:
BniB05g028640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 14070374 | 14071639 | - | BniB05g028640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 47,083.73 Da | 47.48 | 83.52 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 43 | 82 | 5.9E-5 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 235 | 362 | 1.8E-27 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 43 | 110 | 3.01E-11 | IPR036047 |
| SMART | SM00256 | fbox_2 | 45 | 85 | 3.3E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 142 | 378 | 3.5E-37 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 39 | 85 | 8.755626 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30790.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018447035.1 | PREDICTED: F-box protein At1g30790-like [Raphanus sativus] | 0 |
| Q9SY20 | F-box protein At1g30790 OS=Arabidopsis thaliana OX=3702 GN=At1g30790 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7TGP9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_096576 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G30790.1, AT1G32660.1 |
| Brassicaceae | Eutrema salsugineum | 8 | Thhalv10002533m.g.v1.0, Thhalv10007869m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 7 | BniB03g034380.2N, BniB03g069480.2N, BniB05g000090.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008690 |