Basic Information
Locus ID:
BniB05g028470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 13962055 | 13964791 | - | BniB05g028470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 55,213.33 Da | 48.54 | 77.90 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 2.1E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 169 | 199 | 8.3E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 212 | 237 | 8.3E-5 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 308 | 365 | 3.53E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 264 | 5.8E-49 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 368 | 1.1E-5 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 139 | 282 | 2.4E-22 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 7 | 138 | 1.8E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 111 | 140 | 3.2 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 5.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 211 | 241 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 168 | 197 | 4.3E-4 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.203901 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 168 | 197 | 10.073198 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 211 | 237 | 10.68342 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.31873 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 309 | 359 | 9.125594 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.00344 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 168 | 200 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 211 | 243 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.985412 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 324 | 333 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 452 | 483 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_018451314.1 | PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Raphanus sativus] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VEP1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021625 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology