Basic Information
Locus ID:
BniB05g027650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 13599748 | 13605749 | - | BniB05g027650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 123,194.68 Da | 39.27 | 79.30 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 365 | 676 | 3.40324E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 467 | 501 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 922 | 955 | 0.0032 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 351 | 459 | 1.41E-11 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 426 | 962 | 3.97E-48 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 982 | 1103 | 4.32E-6 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 965 | 1117 | 1.0E-5 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 765 | 964 | 2.3E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 331 | 554 | 1.6E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 558 | 700 | 1.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 594 | 634 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1008 | 1048 | 310.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 354 | 393 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 550 | 591 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 454 | 0.077 | IPR001680 |
| SMART | SM00320 | WD40_4 | 916 | 955 | 2.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 504 | 545 | 0.071 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 913 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 460 | 501 | 5.1E-4 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 0.0056 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 7.0E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 832 | 870 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 637 | 678 | 150.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 467 | 510 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.264077 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 923 | 957 | 10.416506 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.448513 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 612 | 643 | 9.505904 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 923 | 964 | 12.647216 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 315 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.1 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_018471440.1 | PREDICTED: topless-related protein 4-like isoform X1 [Raphanus sativus] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6J0MG09 | topless-related protein 4-like isoform X1 OS=Raphanus sativus OX=3726 GN=LOC108842892 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology