Basic Information
Locus ID:
BniB05g027560.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 13545348 | 13546769 | + | BniB05g027560.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 53,869.33 Da | 39.49 | 72.92 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 155 | 219 | 8.8E-14 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 167 | 1.34E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 226 | 1.02E-8 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 215 | 267 | 9.4E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 268 | 416 | 1.4E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 83 | 169 | 6.8E-10 | IPR013083 |
| SMART | SM00647 | ibrneu5 | 155 | 219 | 2.1E-19 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 75 | 297 | 28.335184 | IPR044066 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 429 | 448 | - | IPR001876 |
| Coils | Coil | Coil | 356 | 376 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08730.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_018468567.1 | PREDICTED: probable E3 ubiquitin-protein ligase ARI16 [Raphanus sativus] | 0 |
| Q9C5A4 | Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana OX=3702 GN=ARI16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7VEZ1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_021568 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10013280m.g.v1.0, Thhalv10015828m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 5 | Sp4g18730.v2.2, Sp5g15470.v2.2, Sp5g15490.v2.2 ... |
| Brassicaceae | Brassica nigra | 5 | BniB05g027560.2N, BniB08g058640.2N, BniB08g058660.2N ... |