Basic Information
Locus ID:
BniB05g026260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 12876729 | 12880147 | - | BniB05g026260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 62,480.61 Da | 24.79 | 103.81 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 259 | 361 | 9.68525E-29 | - |
| CDD | cd00030 | C2 | 438 | 538 | 4.05719E-27 | - |
| Pfam | PF00168 | C2 domain | 257 | 361 | 5.0E-26 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 65 | 243 | 1.2E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 436 | 538 | 5.4E-25 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 255 | 386 | 2.23E-31 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 432 | 555 | 2.08E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 416 | 555 | 6.7E-34 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 250 | 386 | 5.0E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 437 | 535 | 2.9E-24 | IPR000008 |
| SMART | SM00239 | C2_3c | 258 | 358 | 2.8E-25 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 238 | 359 | 22.409363 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 60 | 244 | 30.166918 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 417 | 536 | 22.231821 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 479 | 492 | 7.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 501 | 509 | 7.1E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 453 | 465 | 7.1E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_013620100.1 | PREDICTED: synaptotagmin-4 [Brassica oleracea var. oleracea] | 0 |
| A0JJX5 | Synaptotagmin-4 OS=Arabidopsis thaliana OX=3702 GN=SYT4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7NU16 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091660 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology