Basic Information
Locus ID:
BniB05g025610.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 12574156 | 12576676 | + | BniB05g025610.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 77,486.20 Da | 39.48 | 82.19 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 14 | 152 | 3.83935E-35 | - |
| CDD | cd14066 | STKc_IRAK | 419 | 679 | 2.29354E-85 | - |
| Pfam | PF00582 | Universal stress protein family | 16 | 148 | 7.9E-7 | IPR006016 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 416 | 668 | 2.3E-42 | IPR001245 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 15 | 149 | 9.21E-7 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 396 | 667 | 1.48E-68 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 391 | 485 | 2.9E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 486 | 689 | 4.5E-51 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 6 | 152 | 9.2E-8 | IPR014729 |
| SMART | SM00220 | serkin_6 | 413 | 677 | 3.6E-30 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 413 | 677 | 35.961857 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 531 | 543 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 361 | 384 | - | - |
| Coils | Coil | Coil | 272 | 299 | - | - |
| Coils | Coil | Coil | 339 | 390 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_009125843.1 | U-box domain-containing protein 51 isoform X2 [Brassica rapa] | 0 |
| Q8S8S7 | U-box domain-containing protein 34 OS=Arabidopsis thaliana OX=3702 GN=PUB34 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7TDT2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092381 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology