Basic Information
Locus ID:
BniB05g024780.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains WD40 repeat 2 (InterPro IPR019782), WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat, conserved site (InterPro IPR019775), WD40-repeat-containing domain (InterPro IPR017986), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat (InterPro IPR001680), WD40 repeat, subgroup (InterPro IPR019781)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 12104308 | 12104867 | - | BniB05g024780.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 9,667.63 Da | 32.45 | 75.23 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 10 | 46 | 1.1E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 8 | 51 | 4.39E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 71 | 6.7E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 7 | 47 | 4.0E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 15 | 48 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 15 | 56 | 12.647216 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_018437446.1 | PREDICTED: serine-threonine kinase receptor-associated protein-like [Raphanus sativus] | 0 |
| Q5E959 | Serine-threonine kinase receptor-associated protein OS=Bos taurus OX=9913 GN=STRAP PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7NWC5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091643 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | AgUnG00168 |
| Brassicaceae | Brassica nigra | 1 | BniB05g024780.2N |
| Poaceae | Oryza coarctata | 1 | Oco03G005440 |