Basic Information
Locus ID:
BniB05g023920.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 11725541 | 11728857 | - | BniB05g023920.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 70,345.12 Da | 50.82 | 65.51 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 20 | 49 | 8.76974E-5 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 374 | 503 | 1.73768E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 180 | 349 | 5.2E-48 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 386 | 494 | 5.0E-33 | IPR001650 |
| Pfam | PF00397 | WW domain | 19 | 49 | 6.5E-7 | IPR001202 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 227 | 510 | 2.07E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 50 | 3.34E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 131 | 364 | 2.9E-86 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 14 | 60 | 5.7E-6 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 365 | 536 | 2.0E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 174 | 377 | 1.1E-61 | IPR014001 |
| SMART | SM00490 | helicmild6 | 414 | 494 | 1.8E-33 | IPR001650 |
| SMART | SM00456 | ww_5 | 18 | 51 | 2.7E-5 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 389 | 533 | 25.228035 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 17 | 51 | 11.191401 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 155 | 183 | 10.86482 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 186 | 360 | 29.79254 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 306 | 314 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 23 | 49 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 657 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 106 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.5 | - | 0 |
| RefSeq | XP_018471960.1 | PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 46 [Raphanus sativus] | 0 |
| Q9LYJ9 | DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana OX=3702 GN=RH46 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7P7B8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092857 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology