Basic Information
Locus ID:
BniB05g023910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
DNA (cytosine-5-)-methyltransferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 11721794 | 11724525 | + | BniB05g023910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 65,678.26 Da | 50.47 | 81.81 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 458 | 572 | 8.6E-10 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 455 | 575 | 1.33E-17 | IPR029063 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 248 | 449 | 1.2E-18 | IPR029063 |
| SUPERFAMILY | SSF46934 | UBA-like | 70 | 134 | 2.08E-5 | IPR009060 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 450 | 584 | 6.5E-28 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 236 | 349 | 8.7E-6 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 75 | 126 | 2.5E-5 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 22 | 74 | 3.9E-5 | - |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 457 | 584 | 20.00791 | IPR001525 |
| ProSiteProfiles | PS51680 | SAM-dependent methyltransferase DRM-type domain profile. | 252 | 581 | 132.868942 | IPR030380 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 83 | 124 | 10.113087 | IPR015940 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 235 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 154 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14620.1 | domains rearranged methyltransferase 2. A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains. The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues. | 0 |
| RefSeq | XP_048604373.1 | DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Brassica napus] | 0 |
| Q9M548 | DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana OX=3702 GN=DRM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P6X4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092856 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology