halophFGD

Basic Information

Locus ID: BniB05g023670.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	11617948	11619099	+	BniB05g023670.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.41	43,841.59 Da	43.71	80.55	-0.21

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08268	F-box associated domain	223	338	3.8E-32	IPR013187
Pfam	PF00646	F-box domain	29	65	3.4E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	25	96	3.53E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	9	64	4.3E-6	-
SMART	SM00256	fbox_2	28	68	1.3E-5	IPR001810
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	120	350	2.3E-51	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G11590.1	F-box associated ubiquitination effector family protein.
RefSeq	XP_018467628.1	PREDICTED: F-box protein At4g11590-like [Raphanus sativus]
Swiss-Prot	Q9T0C7	F-box protein At4g11590 OS=Arabidopsis thaliana OX=3702 GN=At4g11590 PE=1 SV=1
TrEMBL	A0A8X7TLB6	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092835 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag5G01648
Asparagaceae	Asparagus officinalis	4	AsparagusV1_07.1660.V1.1, AsparagusV1_07.1661.V1.1 ... AsparagusV1_07.1662.V1.1, AsparagusV1_08.1417.V1.1
Brassicaceae	Arabidopsis thaliana	77	AT1G19160.1, AT1G26510.1, AT1G26515.1, AT1G30920.1 ... AT1G30925.1, AT1G30930.1, AT1G31000.1, AT1G31080.1, AT1G31090.1, AT1G31163.1, AT1G32420.1, AT1G33010.1, AT1G33020.1, AT1G43005.1, AT1G46840.1, AT1G46912.1, AT1G46984.1, AT1G47300.1, AT1G47340.1, AT1G47350.1, AT1G47730.1, AT1G47765.1, AT1G47790.1, AT1G48060.1, AT1G50870.1, AT1G53360.1, AT1G53370.1, AT1G53550.1, AT1G53790.2, AT1G53815.1, AT1G55070.1, AT1G59675.1, AT1G60370.1, AT1G61060.1, AT1G67130.1, AT2G02660.1, AT2G02890.1, AT2G13630.1, AT2G15640.1, AT2G16220.1, AT2G16450.1, AT2G19630.1, AT2G21930.1, AT2G23160.1, AT2G31470.1, AT2G32470.1, AT2G33705.1, AT3G04660.1, AT3G10240.1, AT3G10790.1, AT3G10990.1, AT3G23960.1, AT3G47020.1, AT3G47030.1, AT3G49440.1, AT3G49450.1, AT3G56890.1, AT3G57580.1, AT3G57590.1, AT3G61340.1, AT4G09190.1, AT4G11590.1, AT4G13060.1, AT4G21240.1, AT4G29970.1, AT4G38870.1, AT5G15660.1, AT5G15670.1, AT5G18160.1, AT5G22791.2, AT5G38810.1, AT5G42430.1, AT5G43550.1, AT5G44220.1, AT5G52610.1, AT5G52620.1, AT5G65850.1
Brassicaceae	Eutrema salsugineum	140	Thhalv10000190m.g.v1.0, Thhalv10000202m.g.v1.0 ... Thhalv10000468m.g.v1.0, Thhalv10000505m.g.v1.0, Thhalv10000643m.g.v1.0, Thhalv10002880m.g.v1.0, Thhalv10002973m.g.v1.0, Thhalv10002976m.g.v1.0, Thhalv10003077m.g.v1.0, Thhalv10003313m.g.v1.0, Thhalv10003347m.g.v1.0, Thhalv10003356m.g.v1.0, Thhalv10003391m.g.v1.0, Thhalv10003413m.g.v1.0, Thhalv10005289m.g.v1.0, Thhalv10006428m.g.v1.0, Thhalv10006464m.g.v1.0, Thhalv10007859m.g.v1.0, Thhalv10009303m.g.v1.0, Thhalv10009304m.g.v1.0, Thhalv10009314m.g.v1.0, Thhalv10009316m.g.v1.0, Thhalv10009318m.g.v1.0, Thhalv10009326m.g.v1.0, Thhalv10009341m.g.v1.0, Thhalv10009344m.g.v1.0, Thhalv10009370m.g.v1.0, Thhalv10009377m.g.v1.0, Thhalv10009427m.g.v1.0, Thhalv10009437m.g.v1.0, Thhalv10009439m.g.v1.0, Thhalv10009451m.g.v1.0, Thhalv10009454m.g.v1.0, Thhalv10009507m.g.v1.0, Thhalv10009523m.g.v1.0, Thhalv10009543m.g.v1.0, Thhalv10009572m.g.v1.0, Thhalv10009588m.g.v1.0, Thhalv10009603m.g.v1.0, Thhalv10009610m.g.v1.0, Thhalv10009617m.g.v1.0, Thhalv10009628m.g.v1.0, Thhalv10009630m.g.v1.0, Thhalv10009643m.g.v1.0, Thhalv10009644m.g.v1.0, Thhalv10009646m.g.v1.0, Thhalv10009665m.g.v1.0, Thhalv10009733m.g.v1.0, Thhalv10009740m.g.v1.0, Thhalv10009752m.g.v1.0, Thhalv10009762m.g.v1.0, Thhalv10009794m.g.v1.0, Thhalv10009823m.g.v1.0, Thhalv10009829m.g.v1.0, Thhalv10009854m.g.v1.0, Thhalv10009883m.g.v1.0, Thhalv10009932m.g.v1.0, Thhalv10009934m.g.v1.0, Thhalv10010425m.g.v1.0, Thhalv10010942m.g.v1.0, Thhalv10011009m.g.v1.0, Thhalv10011044m.g.v1.0, Thhalv10011080m.g.v1.0, Thhalv10011121m.g.v1.0, Thhalv10011954m.g.v1.0, Thhalv10011960m.g.v1.0, Thhalv10011962m.g.v1.0, Thhalv10011966m.g.v1.0, Thhalv10011975m.g.v1.0, Thhalv10011993m.g.v1.0, Thhalv10011995m.g.v1.0, Thhalv10012047m.g.v1.0, Thhalv10012059m.g.v1.0, Thhalv10012065m.g.v1.0, Thhalv10012070m.g.v1.0, Thhalv10012082m.g.v1.0, Thhalv10012093m.g.v1.0, Thhalv10012114m.g.v1.0, Thhalv10012144m.g.v1.0, Thhalv10012153m.g.v1.0, Thhalv10012176m.g.v1.0, Thhalv10012180m.g.v1.0, Thhalv10012205m.g.v1.0, Thhalv10012217m.g.v1.0, Thhalv10012242m.g.v1.0, Thhalv10012245m.g.v1.0, Thhalv10012258m.g.v1.0, Thhalv10012264m.g.v1.0, Thhalv10012275m.g.v1.0, Thhalv10012279m.g.v1.0, Thhalv10012287m.g.v1.0, Thhalv10012302m.g.v1.0, Thhalv10012324m.g.v1.0, Thhalv10012341m.g.v1.0, Thhalv10012345m.g.v1.0, Thhalv10012346m.g.v1.0, Thhalv10012359m.g.v1.0, Thhalv10012370m.g.v1.0, Thhalv10012378m.g.v1.0, Thhalv10012379m.g.v1.0, Thhalv10015249m.g.v1.0, Thhalv10015343m.g.v1.0, Thhalv10015360m.g.v1.0, Thhalv10015410m.g.v1.0, Thhalv10015435m.g.v1.0, Thhalv10015621m.g.v1.0, Thhalv10015706m.g.v1.0, Thhalv10015829m.g.v1.0, Thhalv10015870m.g.v1.0, Thhalv10015881m.g.v1.0, Thhalv10015900m.g.v1.0, Thhalv10015925m.g.v1.0, Thhalv10017547m.g.v1.0, Thhalv10017821m.g.v1.0, Thhalv10017831m.g.v1.0, Thhalv10019461m.g.v1.0, Thhalv10019467m.g.v1.0, Thhalv10019504m.g.v1.0, Thhalv10019539m.g.v1.0, Thhalv10019545m.g.v1.0, Thhalv10019719m.g.v1.0, Thhalv10020859m.g.v1.0, Thhalv10021999m.g.v1.0, Thhalv10022001m.g.v1.0, Thhalv10022123m.g.v1.0, Thhalv10022199m.g.v1.0, Thhalv10022230m.g.v1.0, Thhalv10023641m.g.v1.0, Thhalv10023891m.g.v1.0, Thhalv10025406m.g.v1.0, Thhalv10026790m.g.v1.0, Thhalv10026850m.g.v1.0, Thhalv10027150m.g.v1.0, Thhalv10027194m.g.v1.0, Thhalv10027439m.g.v1.0, Thhalv10027600m.g.v1.0, Thhalv10028042m.g.v1.0, Thhalv10028106m.g.v1.0, Thhalv10029328m.g.v1.0, Thhalv10029487m.g.v1.0
Brassicaceae	Schrenkiella parvula	23	Sp1g02140.v2.2, Sp1g24400.v2.2, Sp1g27310.v2.2 ... Sp1g27840.v2.2, Sp1g33140.v2.2, Sp1g34250.v2.2, Sp1g34800.v2.2, Sp1g37610.v2.2, Sp1g37770.v2.2, Sp1g40720.v2.2, Sp3g00660.v2.2, Sp3g03500.v2.2, Sp3g03510.v2.2, Sp3g17210.v2.2, Sp4g14420.v2.2, Sp5g04230.v2.2, Sp5g04240.v2.2, Sp5g12630.v2.2, Sp6g06960.v2.2, Sp6g28450.v2.2, Sp7g04870.v2.2, Sp7g24400.v2.2, SpUn0074_0030.v2.2
Brassicaceae	Brassica nigra	133	BniB01g001870.2N, BniB01g010610.2N, BniB01g010810.2N ... BniB01g010850.2N, BniB01g011630.2N, BniB01g011970.2N, BniB01g011990.2N, BniB01g012020.2N, BniB01g012030.2N, BniB01g012090.2N, BniB01g012190.2N, BniB01g012500.2N, BniB01g012530.2N, BniB01g012540.2N, BniB01g012580.2N, BniB01g012950.2N, BniB01g012960.2N, BniB01g012970.2N, BniB01g021660.2N, BniB01g022210.2N, BniB01g022230.2N, BniB01g039610.2N, BniB01g039740.2N, BniB01g044180.2N, BniB01g050970.2N, BniB01g057440.2N, BniB01g059090.2N, BniB01g059700.2N, BniB02g004780.2N, BniB02g010580.2N, BniB02g014000.2N, BniB02g040900.2N, BniB02g047140.2N, BniB02g047180.2N, BniB02g047200.2N, BniB02g048060.2N, BniB02g054960.2N, BniB03g007790.2N, BniB03g010060.2N, BniB03g016980.2N, BniB03g020820.2N, BniB03g021720.2N, BniB03g021760.2N, BniB03g021770.2N, BniB03g021840.2N, BniB03g021860.2N, BniB03g021870.2N, BniB03g021880.2N, BniB03g034710.2N, BniB03g035320.2N, BniB03g035330.2N, BniB03g044450.2N, BniB03g045100.2N, BniB03g045220.2N, BniB03g045230.2N, BniB03g054750.2N, BniB03g058220.2N, BniB04g020390.2N, BniB04g024890.2N, BniB04g041620.2N, BniB04g041640.2N, BniB04g042790.2N, BniB04g042820.2N, BniB04g048150.2N, BniB04g048180.2N, BniB04g048190.2N, BniB04g048230.2N, BniB04g048270.2N, BniB04g048310.2N, BniB04g048330.2N, BniB04g058760.2N, BniB04g059420.2N, BniB04g059450.2N, BniB04g059480.2N, BniB04g059530.2N, BniB04g063630.2N, BniB04g063660.2N, BniB05g009930.2N, BniB05g014560.2N, BniB05g014640.2N, BniB05g014690.2N, BniB05g015540.2N, BniB05g021300.2N, BniB05g021310.2N, BniB05g023670.2N, BniB05g029010.2N, BniB05g041450.2N, BniB05g041520.2N, BniB05g060990.2N, BniB05g061010.2N, BniB05g063190.2N, BniB05g063210.2N, BniB06g005790.2N, BniB06g010060.2N, BniB06g011060.2N, BniB06g012790.2N, BniB06g020540.2N, BniB06g020770.2N, BniB06g020900.2N, BniB06g021130.2N, BniB06g021210.2N, BniB06g021220.2N, BniB06g021460.2N, BniB06g023660.2N, BniB06g026800.2N, BniB06g027740.2N, BniB06g030160.2N, BniB06g047600.2N, BniB06g048710.2N, BniB06g057550.2N, BniB06g064680.2N, BniB07g009330.2N, BniB07g045510.2N, BniB07g058650.2N, BniB07g059370.2N, BniB08g010950.2N, BniB08g011400.2N, BniB08g020060.2N, BniB08g020740.2N, BniB08g028950.2N, BniB08g028960.2N, BniB08g028980.2N, BniB08g028990.2N, BniB08g035250.2N, BniB08g035280.2N, BniB08g035330.2N, BniB08g043500.2N, BniB08g063050.2N, BniB08g063070.2N, BniB08g063540.2N, BniB08g073170.2N, BniS25022g010.2N, BniS25022g030.2N
Portulacaceae	Portulaca oleracea	2	evm.TU.LG02.1335, evm.TU.LG03.15
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_15_RagTag.21, evm.TU.Scaffold_17_RagTag.985
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-23706, nbisL1-mrna-26307, nbisL1-mrna-30200
Rhizophoraceae	Kandelia candel	1	add.evm.TU.utg000001l.7
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-11705
Salicaceae	Populus euphratica	2	populus_peu06950, populus_peu07295
Solanaceae	Lycium barbarum	22	gene-LOC132600137, gene-LOC132605467, gene-LOC132607283 ... gene-LOC132608325, gene-LOC132611684, gene-LOC132612846, gene-LOC132617929, gene-LOC132619462, gene-LOC132619467, gene-LOC132620162, gene-LOC132620204, gene-LOC132623533, gene-LOC132624756, gene-LOC132628532, gene-LOC132628536, gene-LOC132629295, gene-LOC132629297, gene-LOC132637129, gene-LOC132639897, gene-LOC132639898, gene-LOC132639900, gene-LOC132641865
Solanaceae	Solanum chilense	4	SOLCI002533700, SOLCI002640100, SOLCI003759200 ... SOLCI005659900
Solanaceae	Solanum pennellii	10	gene-LOC107016884, gene-LOC107020295, gene-LOC107030852 ... gene-LOC114075240, gene-LOC114075356, gene-LOC114075587, gene-LOC114075617, gene-LOC114075656, gene-LOC114076467, gene-LOC114076739