Basic Information
Locus ID:
BniB05g023110.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 11352160 | 11353305 | - | BniB05g023110.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 43,655.85 Da | 35.22 | 81.84 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 16 | 57 | 2.2E-9 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 217 | 336 | 1.5E-24 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 83 | 9.29E-11 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 132 | 350 | 3.14E-5 | IPR011043 |
| SMART | SM00256 | fbox_2 | 17 | 57 | 5.4E-6 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 116 | 345 | 1.2E-49 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 57 | 9.232525 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11590.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_018469589.1 | PREDICTED: F-box protein At4g11590-like [Raphanus sativus] | 0 |
| Q9T0C7 | F-box protein At4g11590 OS=Arabidopsis thaliana OX=3702 GN=At4g11590 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7NUU9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091944 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47800.1, AT1G47810.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015726m.g.v1.0, Thhalv10019453m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB03g042830.2N, BniB05g023080.2N, BniB05g023090.2N ... |