Basic Information
Locus ID:
BniB05g023080.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 11338142 | 11339224 | - | BniB05g023080.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 41,255.19 Da | 33.97 | 82.53 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08268 | F-box associated domain | 193 | 314 | 7.8E-25 | IPR013187 |
| Pfam | PF02191 | Olfactomedin-like domain | 137 | 231 | 2.1E-5 | IPR003112 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 66 | 6.8E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 110 | 328 | 8.24E-8 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 5 | 294 | 2.5E-5 | IPR015915 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 96 | 323 | 1.3E-46 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11590.1 | F-box associated ubiquitination effector family protein. | 0 |
| RefSeq | XP_018467633.1 | PREDICTED: F-box protein At4g11590-like [Raphanus sativus] | 0 |
| Q9T0C7 | F-box protein At4g11590 OS=Arabidopsis thaliana OX=3702 GN=At4g11590 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6D8P7 | F-box domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC2T06714H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G47800.1, AT1G47810.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015726m.g.v1.0, Thhalv10019453m.g.v1.0 |
| Brassicaceae | Brassica nigra | 5 | BniB03g042830.2N, BniB05g023080.2N, BniB05g023090.2N ... |