Basic Information
Locus ID:
BniB05g022400.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Transducin beta-like protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 10934713 | 10938819 | + | BniB05g022400.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 96,715.24 Da | 44.01 | 84.87 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 349 | 651 | 2.0851E-62 | - |
| CDD | cd00200 | WD40 | 94 | 474 | 1.4301E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 93 | 130 | 2.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 136 | 174 | 1.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 431 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 533 | 567 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 572 | 610 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 56 | 88 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 615 | 651 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 436 | 474 | 0.0017 | IPR001680 |
| Pfam | PF08625 | Utp13 specific WD40 associated domain | 674 | 807 | 5.4E-40 | IPR013934 |
| Pfam | PF00400 | WD domain, G-beta repeat | 183 | 220 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 494 | 525 | 0.0013 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 51 | 406 | 2.56E-58 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 651 | 1.54E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 25 | 179 | 3.3E-41 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 308 | 526 | 4.6E-36 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 180 | 307 | 1.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 527 | 695 | 1.9E-40 | IPR015943 |
| SMART | SM00320 | WD40_4 | 346 | 386 | 9.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 652 | 5.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 49 | 88 | 2.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 133 | 174 | 7.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 181 | 220 | 5.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 571 | 610 | 2.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 526 | 8.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 568 | 6.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 389 | 431 | 1.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 434 | 474 | 4.7E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 130 | 1.7E-10 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 56 | 97 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 188 | 229 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 536 | 573 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 396 | 440 | 10.775796 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 578 | 615 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 98 | 132 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 536 | 577 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 494 | 527 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 140 | 175 | 12.657402 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 140 | 183 | 15.654854 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 578 | 619 | 14.41838 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 494 | 527 | 9.467419 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 620 | 651 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 188 | 221 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 620 | 651 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 441 | 476 | 11.377324 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 396 | 434 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 56 | 93 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 441 | 476 | 9.520146 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 98 | 132 | 11.811761 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 207 | 221 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 117 | 131 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 161 | 175 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 161 | 175 | 1.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 461 | 475 | 1.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 418 | 432 | 1.9E-8 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 835 | 866 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16750.1 | Transducin family protein / WD-40 repeat family protein. Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development. | 0 |
| RefSeq | XP_018472145.1 | PREDICTED: transducin beta-like protein 3 isoform X1 [Raphanus sativus] | 0 |
| Q9LFE2 | Protein TORMOZ EMBRYO DEFECTIVE OS=Arabidopsis thaliana OX=3702 GN=TOZ PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0MI25 | transducin beta-like protein 3 isoform X1 OS=Raphanus sativus OX=3726 GN=LOC108843445 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2053 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15511 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah024730 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012450 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39300, Sbi_jg54626 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg11150 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020542 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl15114, Sgl20242, Sgl20255 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015509, gene:ENSEOMG00000032914 ... |
| Amaranthaceae | Chenopodium quinoa | 6 | CQ.Regalona.r1.1AG0015600, CQ.Regalona.r1.1BG0010080 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30217010 |
| Apiaceae | Apium graveolens | 1 | Ag3G02356 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G012200, COCNU_07G003690 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701598 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3487.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24593 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G16750.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012644m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g27370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g046000.2N, BniB05g022400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1761 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1937 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g08420 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0002s00015.v1.0, Dusal.0002s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g18680 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.2404 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011279 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03207, Lb1G03224 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2142, BH09.2305, CH09.2445 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0305630, gene-QOZ80_4BG0336600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197290.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045955, gene-QYE76_046012 |
| Poaceae | Oryza coarctata | 2 | Oco07G014590, Oco08G014050 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g50660.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G210800 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0206006, Pt_Chr0301539, Pt_Chr0301550, Pt_Chr0305598 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G003250, Chr25G004250, Chr26G014440, Chr30G004100 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G758800, Tel7E01G881400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG063940, gene_TRIDC2BG068140 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G447700.1, TraesCS2B02G468100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb072270_P001, Zm00001eb153310_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-22717 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20346 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2511, evm.TU.LG23.732 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g20630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.575 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7607 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15718 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5596 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.351 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011434 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8466 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-680 |
| Salicaceae | Populus euphratica | 2 | populus_peu16232, populus_peu31249 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630652, gene-LOC132632257 |
| Solanaceae | Solanum chilense | 1 | SOLCI002068200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012090 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8601_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G2432 |
| Zosteraceae | Zostera marina | 1 | Zosma04g02310.v3.1 |