Basic Information
Locus ID:
BniB05g022340.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
nucleic acid binding nucleotide binding oxidoreductase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 10918094 | 10920276 | - | BniB05g022340.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 27,154.96 Da | 34.31 | 70.12 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 65 | 7.1E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 4 | 81 | 1.88E-15 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 77 | 4.3E-12 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 71 | 1.2E-10 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 75 | 12.782055 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 235 | 251 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G16840.3 | binding partner of acd11 1. | 0 |
| RefSeq | XP_009126144.2 | binding partner of ACD11 1 [Brassica rapa] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A398ACZ1 | RRM domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_B00681 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology