Basic Information
Locus ID:
BniB05g020230.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 9726245 | 9729779 | + | BniB05g020230.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 56,935.16 Da | 45.87 | 80.36 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 325 | 502 | 4.23692E-114 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 4 | 99 | 2.7E-13 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 324 | 431 | 4.9E-19 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 327 | 457 | 8.11E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 313 | 502 | 2.0E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 113 | 4.5E-32 | - |
| SMART | SM00232 | pad1_6 | 327 | 455 | 4.8E-16 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 328 | 458 | 28.884012 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 155 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_013616059.1 | PREDICTED: AMSH-like ubiquitin thioesterase 3 [Brassica oleracea var. oleracea] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7NT87 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089970 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology