Basic Information
Locus ID:
BniB05g020060.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
CBL2
Description:
calcium ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 9633284 | 9634515 | + | BniB05g020060.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 26,201.85 Da | 39.40 | 84.63 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 120 | 190 | 9.25055E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 118 | 187 | 7.5E-8 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 34 | 215 | 2.01E-42 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 33 | 223 | 3.8E-61 | - |
| SMART | SM00054 | efh_1 | 164 | 192 | 3.2 | IPR002048 |
| SMART | SM00054 | efh_1 | 83 | 111 | 8.3 | IPR002048 |
| SMART | SM00054 | efh_1 | 120 | 148 | 1.5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 116 | 151 | 12.225983 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 160 | 195 | 10.580154 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 79 | 114 | 9.826979 | IPR002048 |
| PRINTS | PR00450 | Recoverin family signature | 87 | 108 | 3.5E-6 | - |
| PRINTS | PR00450 | Recoverin family signature | 134 | 152 | 3.5E-6 | - |
| PRINTS | PR00450 | Recoverin family signature | 180 | 200 | 3.5E-6 | - |
| PRINTS | PR00450 | Recoverin family signature | 43 | 62 | 3.5E-6 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko04010 (MAPK signaling pathway)
map04010 (MAPK signaling pathway)
ko04020 (Calcium signaling pathway)
map04020 (Calcium signaling pathway)
ko04022 (cGMP-PKG signaling pathway)
map04022 (cGMP-PKG signaling pathway)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04218 (Cellular senescence)
map04218 (Cellular senescence)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04370 (VEGF signaling pathway)
map04370 (VEGF signaling pathway)
map04650 (Natural killer cell mediated cytotoxicity)
map04658 (Th1 and Th2 cell differentiation)
map04659 (Th17 cell differentiation)
map04660 (T cell receptor signaling pathway)
map04662 (B cell receptor signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16350.1 | calcineurin B-like protein 6. Calcium sensor protein. Binds CIPK14. | 0 |
| RefSeq | XP_018470347.1 | PREDICTED: calcineurin B-like protein 6 [Raphanus sativus] | 0 |
| Q9C5P6 | Calcineurin B-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=CBL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7NWA3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089954 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology