Basic Information
Locus ID:
BniB05g018650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 8908904 | 8910522 | + | BniB05g018650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 32,945.72 Da | 38.68 | 76.91 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 7 | 68 | 5.0E-7 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 3 | 80 | 3.12E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 2 | 74 | 3.4E-8 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 5 | 74 | 2.9E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 78 | 10.42841 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 307 | - | - |
| Coils | Coil | Coil | 223 | 243 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17720.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | NP_567536.1 | RNA-binding (RRM/RBD/RNP motifs) family protein [Arabidopsis thaliana] | 0 |
| Q9LFD5 | Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TEQ6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089812 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology