Basic Information
Locus ID:
BniB05g018490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 8814854 | 8816635 | + | BniB05g018490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 64,656.95 Da | 47.04 | 69.85 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 413 | 489 | 8.52307E-50 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 61 | 257 | 7.0E-53 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 420 | 465 | 1.3E-10 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 419 | 486 | 1.83E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 408 | 494 | 1.1E-17 | IPR036638 |
| SMART | SM00353 | finulus | 422 | 471 | 8.3E-17 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 416 | 465 | 17.281994 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 426 | - | - |
| Coils | Coil | Coil | 455 | 489 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17880.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_009131125.3 | transcription factor MYC4 [Brassica rapa] | 0 |
| O49687 | Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TEC8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089795 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology