halophFGD

Basic Information

Locus ID: BniB05g017590.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: octanoyl transferase activity (acting on glycine-cleavage complex H protein)

Maps and Mapping Data

Chromosome/Scaffold	Start	End	Strand	ID
B5	8414090	8415453	+	BniB05g017590.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.33	39,232.44 Da	38.94	82.98	-0.17

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	4	42	1.3E-7	IPR001810
Pfam	PF07734	F-box associated	207	340	2.8E-34	IPR006527
SUPERFAMILY	SSF81383	F-box domain	2	55	1.7E-9	IPR036047
TIGRFAM	TIGR01640	F_box_assoc_1: F-box protein interaction domain	177	338	1.4E-22	IPR017451

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G17200.1	F-box and associated interaction domains-containing protein.
RefSeq	XP_033142582.1	F-box/kelch-repeat protein At3g13680 [Brassica rapa]
Swiss-Prot	Q9M0M7	Putative F-box protein At4g17200 OS=Arabidopsis thaliana OX=3702 GN=At4g17200 PE=4 SV=1
TrEMBL	M4DA38	F-box domain-containing protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	24	AT1G24800.1, AT1G24881.1, AT1G25055.1, AT1G25150.1 ... AT1G25211.1, AT1G32140.1, AT1G54550.1, AT1G59680.1, AT1G66490.1, AT1G67450.1, AT1G67455.1, AT2G33655.1, AT3G13680.1, AT3G13820.1, AT3G14030.1, AT3G19880.1, AT3G19890.1, AT3G20030.1, AT3G20400.1, AT3G49510.1, AT3G49520.1, AT4G05080.1, AT4G17200.1, AT5G60560.1
Brassicaceae	Eutrema salsugineum	15	Thhalv10000447m.g.v1.0, Thhalv10002786m.g.v1.0 ... Thhalv10003097m.g.v1.0, Thhalv10009753m.g.v1.0, Thhalv10009944m.g.v1.0, Thhalv10015452m.g.v1.0, Thhalv10019643m.g.v1.0, Thhalv10022026m.g.v1.0, Thhalv10022402m.g.v1.0, Thhalv10023084m.g.v1.0, Thhalv10023095m.g.v1.0, Thhalv10023820m.g.v1.0, Thhalv10023848m.g.v1.0, Thhalv10024142m.g.v1.0, Thhalv10027178m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp3g11150.v2.2, Sp3g32750.v2.2
Brassicaceae	Brassica nigra	13	BniB01g039260.2N, BniB02g015480.2N, BniB04g007550.2N ... BniB04g047270.2N, BniB05g002470.2N, BniB05g017590.2N, BniB06g018860.2N, BniB06g051530.2N, BniB07g030840.2N, BniB07g031550.2N, BniB07g055480.2N, BniB08g028340.2N, BniB08g067670.2N