halophFGD

Basic Information

Locus ID: BniB05g017370.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: AMP-binding enzyme C-terminal domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	8316719	8319098	+	BniB05g017370.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.69	62,227.26 Da	41.72	97.43	0.14

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd05904	4CL	43	560	0.0	-
Pfam	PF13193	AMP-binding enzyme C-terminal domain	480	554	1.3E-15	IPR025110
Pfam	PF00501	AMP-binding enzyme	65	470	3.7E-100	IPR000873
SUPERFAMILY	SSF56801	Acetyl-CoA synthetase-like	53	566	2.62E-137	-
Gene3D	G3DSA:3.30.300.30	-	466	569	2.9E-29	-
Gene3D	G3DSA:3.40.50.12780	-	32	465	5.1E-118	IPR042099
ProSitePatterns	PS00455	Putative AMP-binding domain signature.	215	226	-	IPR020845
MobiDBLite	mobidb-lite	consensus disorder prediction	1	23	-	-

KEGG Pathway

KO Term:

K01904 (4-coumarate--CoA ligase [EC:6.2.1.12])

Pathway:

ko00130 (Ubiquinone and other terpenoid-quinone biosynthesis) map00130 (Ubiquinone and other terpenoid-quinone biosynthesis) ko00360 (Phenylalanine metabolism) map00360 (Phenylalanine metabolism) ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00039 (Monolignol biosynthesis, phenylalanine/tyrosine => monolignol) M00137 (Flavanone biosynthesis, phenylalanine => naringenin)

Reaction:

R01616 (ATP + 4-Coumarate + CoA <=> AMP + Diphosphate + p-Coumaroyl-CoA) R01943 (ATP + Caffeate + CoA <=> AMP + Diphosphate + Caffeoyl-CoA) R02194 (ATP + Ferulate + CoA <=> AMP + Diphosphate + Feruloyl-CoA) R02221 (ATP + Sinapate + CoA <=> AMP + Diphosphate + Sinapoyl-CoA) R02255 (ATP + trans-Cinnamate + CoA <=> AMP + Diphosphate + Cinnamoyl-CoA) R06583 (5-Hydroxyferulic acid + CoA + ATP <=> 5-Hydroxyferuloyl-CoA + AMP + Diphosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G19010.1	AMP-dependent synthetase and ligase family protein.
RefSeq	XP_013719451.1	4-coumarate--CoA ligase-like 6 [Brassica napus]
Swiss-Prot	Q84P24	4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana OX=3702 GN=4CLL6 PE=1 SV=2
TrEMBL	A0A8X7TJQ8	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_093770 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg23598, jg23601, jg39700
Aizoaceae	Mesembryanthemum crystallinum	1	gene_15073
Amaranthaceae	Atriplex hortensis	1	Ah004411
Amaranthaceae	Beta vulgaris	1	BVRB_5g107340
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg23785, Sbi_jg7617
Amaranthaceae	Salicornia europaea	1	Seu_jg12402
Amaranthaceae	Suaeda glauca	2	Sgl51212, Sgl56512
Amaranthaceae	Chenopodium album	2	gene:ENSEOMG00000021123, gene:ENSEOMG00000024829
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0001480, CQ.Regalona.r1.5BG0001620
Anacardiaceae	Pistacia vera	1	pistato.v30030150
Apiaceae	Apium graveolens	1	Ag6G00850
Arecaceae	Cocos nucifera	1	COCNU_07G003350
Arecaceae	Phoenix dactylifera	1	gene-LOC103708041
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1029.V1.1
Asteraceae	Flaveria trinervia	4	Ftri14G06178, Ftri14G09068, Ftri14G21456, Ftri7G01885
Brassicaceae	Arabidopsis thaliana	1	AT4G19010.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10024787m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g17740.v2.2
Brassicaceae	Brassica nigra	1	BniB05g017370.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G0142, Ceq01G0143
Casuarinaceae	Casuarina glauca	2	Cgl01G0129, Cgl01G0131
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno12g05040
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate05g07080
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG05.894
Plantaginaceae	Plantago ovata	2	Pov_00003819, Pov_00029632
Plumbaginaceae	Limonium bicolor	2	Lb2G14294, Lb3G19650
Poaceae	Echinochloa crus-galli	3	AH01.2759, BH01.3089, CH01.3312
Poaceae	Eleusine coracana subsp. coracana	1	gene-QOZ80_2AG0118500
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0053690.1
Poaceae	Lolium multiflorum	2	gene-QYE76_012968, gene-QYE76_037589
Poaceae	Oryza coarctata	3	Oco16G001940, Oco19G011200, Oco20G011080
Poaceae	Oryza sativa	2	LOC_Os08g04770.1, LOC_Os10g42800.1
Poaceae	Paspalum vaginatum	1	gene-BS78_01G271500
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0503428, Pt_Chr0503469
Poaceae	Sporobolus alterniflorus	4	Chr09G006410, Chr13G018320, Chr13G018420, Chr13G018550
Poaceae	Thinopyrum elongatum	1	Tel1E01G340700
Poaceae	Triticum dicoccoides	2	gene_TRIDC1AG029890, gene_TRIDC1BG035380
Poaceae	Triticum aestivum	3	TraesCS1A02G196700.1, TraesCS1B02G211300.1 ... TraesCS1D02G200200.1
Poaceae	Zea mays	1	Zm00001eb025180_P003
Poaceae	Zoysia japonica	1	nbis-gene-38192
Poaceae	Zoysia macrostachya	1	Zma_g15776
Portulacaceae	Portulaca oleracea	2	evm.TU.LG10.629, evm.TU.LG17.640
Posidoniaceae	Posidonia oceanica	1	gene.Posoc09g00940
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-22782
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13326
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-20461
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-3634
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-6832
Salicaceae	Populus euphratica	1	populus_peu34108
Solanaceae	Lycium barbarum	2	gene-LOC132635382, gene-LOC132635383
Solanaceae	Solanum chilense	1	SOLCI005934200
Solanaceae	Solanum pennellii	1	gene-LOC107027934
Tamaricaceae	Reaumuria soongarica	1	gene_16142
Zosteraceae	Zostera marina	1	Zosma06g20980.v3.1