Basic Information
Locus ID:
BniB05g017360.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 8306158 | 8312124 | - | BniB05g017360.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 133,247.11 Da | 46.85 | 69.59 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 744 | 800 | 4.97204E-29 | - |
| CDD | cd04716 | BAH_plantDCM_I | 487 | 603 | 1.02664E-57 | - |
| Pfam | PF01426 | BAH domain | 488 | 592 | 1.5E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 809 | 1170 | 1.8E-33 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 745 | 798 | 4.0E-11 | IPR023780 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 634 | 1170 | 4.21E-76 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 731 | 799 | 1.1E-13 | IPR016197 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 637 | 1187 | 2.8E-233 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 963 | 1136 | 2.8E-233 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 425 | 587 | 6.7E-44 | IPR043151 |
| SMART | SM00439 | BAH_4 | 487 | 602 | 2.3E-25 | IPR001025 |
| SMART | SM00298 | chromo_7 | 744 | 803 | 6.6E-11 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 487 | 602 | 18.880175 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 635 | 1177 | 45.514889 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 745 | 798 | 12.050701 | IPR000953 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 858 | 872 | 7.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 636 | 652 | 7.9E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 904 | 917 | 7.9E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_013597188.1 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8X7TJW7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_093767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology