Basic Information
Locus ID:
BniB05g016330.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 7759725 | 7762971 | - | BniB05g016330.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.57 | 106,789.41 Da | 30.72 | 104.42 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 271 | 292 | 0.7 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 174 | 195 | 0.026 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 441 | 463 | 1.5 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 468 | 524 | 2.4E-9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 686 | 954 | 4.9E-46 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 72 | 1.1E-8 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 105 | 547 | 1.73E-60 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 675 | 956 | 1.64E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 334 | 429 | 4.53E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 192 | 5.6E-44 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 657 | 761 | 2.2E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 331 | 608 | 1.9E-81 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 206 | 330 | 4.7E-30 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 762 | 964 | 1.2E-54 | - |
| SMART | SM00369 | LRR_typ_2 | 172 | 196 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 244 | 268 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 511 | 535 | 180.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 684 | 934 | 1.1E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 316 | 340 | 80.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 463 | 487 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 99 | 123 | 110.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 513 | 535 | 7.303818 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 684 | 964 | 36.654423 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 690 | 713 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 806 | 818 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20270.1 | Leucine-rich receptor-like protein kinase family protein. Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. | 0 |
| RefSeq | XP_009133589.1 | leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Brassica rapa] | 0 |
| O65440 | Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3 | 0 | |
| TrEMBL | A0A398AMN8 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA01T01139Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology