halophFGD

Basic Information

Locus ID: BniB05g016030.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	7597802	7599079	-	BniB05g016030.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	47,830.18 Da	44.81	91.41	-0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	10	51	6.1E-5	IPR001810
SUPERFAMILY	SSF81383	F-box domain	10	87	7.72E-7	IPR036047
SMART	SM00256	fbox_2	11	51	0.0046	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	5	54	9.497469	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G26010.1	Galactose oxidase/kelch repeat superfamily protein.	0
RefSeq	XP_018467705.1	PREDICTED: LOW QUALITY PROTEIN: F-box protein At3g26010-like [Raphanus sativus]	0
Swiss-Prot	Q9LU90	F-box protein At3g26010 OS=Arabidopsis thaliana OX=3702 GN=At3g26010 PE=2 SV=1	0
TrEMBL	A0A8X7P5H1	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094459 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Brassicaceae	Arabidopsis thaliana	10	AT1G15680.1, AT1G49990.1, AT3G23950.1, AT3G23970.1 ... AT3G26010.1, AT3G28223.1, AT3G28280.1, AT3G28330.1, AT3G48220.1, AT4G22430.1
Brassicaceae	Eutrema salsugineum	14	Thhalv10000704m.g.v1.0, Thhalv10001535m.g.v1.0 ... Thhalv10009395m.g.v1.0, Thhalv10009727m.g.v1.0, Thhalv10011517m.g.v1.0, Thhalv10013759m.g.v1.0, Thhalv10019528m.g.v1.0, Thhalv10022100m.g.v1.0, Thhalv10023522m.g.v1.0, Thhalv10023870m.g.v1.0, Thhalv10024137m.g.v1.0, Thhalv10027176m.g.v1.0, Thhalv10028185m.g.v1.0, Thhalv10029227m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g36850.v2.2, Sp2g04630.v2.2, Sp3g21990.v2.2 ... Sp5g25320.v2.2, SpUn0003_0080.v2.2, SpUn0137_0030.v2.2
Brassicaceae	Brassica nigra	20	BniB01g029840.2N, BniB01g029880.2N, BniB01g037070.2N ... BniB02g040930.2N, BniB02g041990.2N, BniB02g042880.2N, BniB02g072790.2N, BniB02g080470.2N, BniB03g022200.2N, BniB04g006950.2N, BniB04g019910.2N, BniB04g057180.2N, BniB04g057190.2N, BniB04g060460.2N, BniB04g060490.2N, BniB04g060520.2N, BniB05g016030.2N, BniB05g026460.2N, BniB06g034010.2N, BniB06g034020.2N
Plantaginaceae	Plantago ovata	1	Pov_00032378