halophFGD

Basic Information

Locus ID: BniB05g015950.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: BRCT domain, a BRCA1 C-terminus domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	7565286	7569559	-	BniB05g015950.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.09	104,013.58 Da	55.34	66.33	-0.74

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd17734	BRCT_Bard1_rpt1	728	807	2.11192E-28	-
Pfam	PF16589	BRCT domain, a BRCA1 C-terminus domain	837	935	2.0E-8	IPR001357
Pfam	PF13923	Zinc finger, C3HC4 type (RING finger)	15	53	7.0E-9	-
Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	727	801	1.0E-6	IPR001357
Pfam	PF13771	PHD-like zinc-binding domain	596	671	2.2E-10	-
SUPERFAMILY	SSF52113	BRCT domain	839	934	3.01E-13	IPR036420
SUPERFAMILY	SSF52113	BRCT domain	728	831	5.1E-23	IPR036420
SUPERFAMILY	SSF57850	RING/U-box	5	78	5.96E-18	-
Gene3D	G3DSA:3.40.50.10190	BRCT domain	725	831	1.1E-30	IPR036420
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	2	85	2.7E-18	IPR013083
Gene3D	G3DSA:3.40.50.10190	BRCT domain	837	930	7.7E-20	IPR036420
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	554	677	3.6E-23	IPR013083
SMART	SM00184	ring_2	16	53	6.3E-7	IPR001841
SMART	SM00292	BRCT_7	718	804	1.6E-12	IPR001357
SMART	SM00292	BRCT_7	837	930	1.2E-11	IPR001357
SMART	SM00249	PHD_3	627	675	0.0012	IPR001965
SMART	SM00184	ring_2	628	674	12.0	IPR001841
PIRSF	PIRSF001734	BRCA1	518	665	1.0E-25	IPR031099
PIRSF	PIRSF001734	BRCA1	657	936	1.1E-93	IPR031099
PIRSF	PIRSF001734	BRCA1	392	462	0.061	IPR031099
PIRSF	PIRSF001734	BRCA1	301	392	4.8E-4	IPR031099
PIRSF	PIRSF001734	BRCA1	449	522	0.002	IPR031099
PIRSF	PIRSF001734	BRCA1	1	313	2.7E-73	IPR031099
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	16	54	12.445019	IPR001841
ProSiteProfiles	PS50172	BRCT domain profile.	716	814	14.84188	IPR001357
ProSiteProfiles	PS50172	BRCT domain profile.	835	936	14.06292	IPR001357
ProSiteProfiles	PS51805	Extended PHD (ePHD) domain profile.	555	675	22.961271	IPR034732
ProSitePatterns	PS00518	Zinc finger RING-type signature.	31	40	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	341	369	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	496	517	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	215	519	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	400	417	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	682	713	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	97	119	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	456	471	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	301	315	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	418	447	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	239	263	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	142	-	-

Gene Ontology

Biological Process:

GO:0006281 (DNA repair) GO:0006974 (DNA damage response)

KEGG Pathway

KO Term:

K10683 (BRCA1-associated RING domain protein 1)

Pathway:

ko03440 (Homologous recombination) map03440 (Homologous recombination)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G21070.1	breast cancer susceptibility1. Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.
RefSeq	XP_018449796.1	PREDICTED: protein BREAST CANCER SUSCEPTIBILITY 1 homolog [Raphanus sativus]
Swiss-Prot	Q8RXD4	Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis thaliana OX=3702 GN=BRCA1 PE=1 SV=1
TrEMBL	A0A8X7P5Z2	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_093594 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg22309, jg35444, jg8668
Aizoaceae	Mesembryanthemum crystallinum	4	gene_14361, gene_5282, gene_5286, gene_651
Amaranthaceae	Atriplex hortensis	2	Ah016382, Ah029205
Amaranthaceae	Beta vulgaris	2	BVRB_7g165610, BVRB_8g187360
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg1166, Sbi_jg35422, Sbi_jg40566, Sbi_jg50593
Amaranthaceae	Salicornia europaea	2	Seu_jg2150, Seu_jg3548
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00018107, GOSA_00024437
Amaranthaceae	Suaeda glauca	7	Sgl45218, Sgl45235, Sgl50015, Sgl74208, Sgl74211, Sgl77638 ... Sgl77785
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000005554, gene:ENSEOMG00000033335 ... gene:ENSEOMG00000034823, gene:ENSEOMG00000042372, gene:ENSEOMG00000046837
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.7AG0011830, CQ.Regalona.r1.7BG0013890 ... CQ.Regalona.r1.8AG0010010, CQ.Regalona.r1.8BG0011250
Anacardiaceae	Pistacia vera	2	pistato.v30015990, pistato.v30075910
Apiaceae	Apium graveolens	4	Ag2G01296, Ag2G01298, Ag7G00035, Ag8G00748
Arecaceae	Cocos nucifera	2	COCNU_06G020500, scaffold009984G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103703717, gene-LOC103716250
Asparagaceae	Asparagus officinalis	3	AsparagusV1_04.154.V1.1, AsparagusV1_07.1985.V1.1 ... AsparagusV1_07.3449.V1.1
Asteraceae	Flaveria trinervia	5	Ftri15G21678, Ftri17G00307, Ftri17G28730, Ftri6G27338 ... FtriNA20742
Brassicaceae	Arabidopsis thaliana	2	AT1G04020.1, AT4G21070.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10006912m.g.v1.0, Thhalv10024364m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g02860.v2.2, Sp7g19160.v2.2
Brassicaceae	Brassica nigra	4	BniB02g001490.2N, BniB03g000680.2N, BniB03g022240.2N ... BniB05g015950.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1356
Casuarinaceae	Casuarina glauca	1	Cgl06G1420
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno17g04530
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate04g00810, gene.Thate04g16490, gene.Thate04g16500 ... gene.Thate06g19340, gene.Thate08g24340
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-6366, nbisL1-mrna-9698, nbisL1-mrna-9699
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.1121, evm.TU.LG12.155
Plantaginaceae	Plantago ovata	2	Pov_00024587, Pov_00038530
Plumbaginaceae	Limonium bicolor	2	Lb4G24930, Lb4G26026
Poaceae	Echinochloa crus-galli	8	AH05.1787, AH05.1988, AH09.1535, BH05.1954, BH05.2129 ... BH09.1734, CH05.2021, CH05.2190
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_4AG0310980, gene-QOZ80_4BG0342190 ... gene-QOZ80_5AG0367210, gene-QOZ80_5AG0368970, gene-QOZ80_5BG0414820, gene-QOZ80_5BG0416560
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0070230.1, HORVU.MOREX.r3.1HG0078370.1 ... HORVU.MOREX.r3.2HG0118690.1, HORVU.MOREX.r3.2HG0181390.1
Poaceae	Lolium multiflorum	5	gene-QYE76_013937, gene-QYE76_013938, gene-QYE76_014832 ... gene-QYE76_047883, gene-QYE76_049606
Poaceae	Oryza coarctata	5	Oco07G010570, Oco08G010310, Oco09G012620, Oco10G012700 ... Oco10G013910
Poaceae	Oryza sativa	3	LOC_Os04g43300.1, LOC_Os05g40810.1, LOC_Os05g43610.1
Poaceae	Paspalum vaginatum	3	gene-BS78_06G157200, gene-BS78_09G180200 ... gene-BS78_09G198000
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0302108, Pt_Chr0302132, Pt_Chr0504246, Pt_Chr0504250 ... Pt_Chr0504460, Pt_Chr0504522
Poaceae	Sporobolus alterniflorus	9	Chr01G017220, Chr12G019500, Chr18G012490, Chr18G013560 ... Chr22G004080, Chr22G005290, Chr23G008930, Chr25G010730, Chr26G010740
Poaceae	Thinopyrum elongatum	4	Tel1E01G493200, Tel1E01G536800, Tel2E01G283000 ... Tel2E01G660100
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG045340, gene_TRIDC1AG048940 ... gene_TRIDC1BG051210, gene_TRIDC1BG051250, gene_TRIDC1BG055610, gene_TRIDC2AG017320, gene_TRIDC2AG055460, gene_TRIDC2BG020890, gene_TRIDC2BG058230, gene_TRIDC4BG030250
Poaceae	Triticum aestivum	14	TraesCS1A02G304700.1, TraesCS1A02G329600.1 ... TraesCS1B02G315000.1, TraesCS1B02G315300.1, TraesCS1B02G343100.2, TraesCS1D02G304000.1, TraesCS1D02G304600.1, TraesCS1D02G331700.1, TraesCS2A02G139100.2, TraesCS2A02G384900.1, TraesCS2B02G163200.1, TraesCS2B02G401900.1, TraesCS2D02G142000.2, TraesCS2D02G381600.1
Poaceae	Zea mays	3	Zm00001eb077450_P001, Zm00001eb245990_P002 ... Zm00001eb292490_P001
Poaceae	Zoysia japonica	4	nbis-gene-14394, nbis-gene-14395, nbis-gene-25341 ... nbis-gene-5250
Poaceae	Zoysia macrostachya	3	Zma_g21605, Zma_g26893, Zma_g28465
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.1329, evm.TU.LG01.545, evm.TU.LG03.917 ... evm.TU.LG04.1137, evm.TU.LG04.220, evm.TU.LG05.1678, evm.TU.LG12.816
Posidoniaceae	Posidonia oceanica	2	gene.Posoc06g01130, gene.Posoc10g05060
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.858, evm.TU.Scaffold_5_RagTag.1128
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11597, nbisL1-mrna-25027
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-4874, nbisL1-mrna-6143
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-19222
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000006l.396, evm.TU.utg000022l.63
Rhizophoraceae	Kandelia obovata	2	Maker00013168, Maker00016219
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-59, nbisL1-mrna-9896
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10290, nbisL1-mrna-19833
Salicaceae	Populus euphratica	2	populus_peu00932, populus_peu30745
Solanaceae	Lycium barbarum	3	gene-LOC132605718, gene-LOC132610669, gene-LOC132611460
Solanaceae	Solanum chilense	3	SOLCI000661100, SOLCI002722200, SOLCI004840000
Solanaceae	Solanum pennellii	5	gene-LOC107005400, gene-LOC107018841, gene-LOC107022026 ... gene-LOC107028944, gene-LOC107029828
Tamaricaceae	Reaumuria soongarica	2	STRG.253_chr01_-, gene_9697
Tamaricaceae	Tamarix chinensis	2	TC01G0588, TC06G1111
Zosteraceae	Zostera marina	3	Zosma01g38440.v3.1, Zosma03g23680.v3.1, Zosma05g29400.v3.1