Basic Information
Locus ID:
BniB05g015500.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 7360632 | 7361756 | - | BniB05g015500.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 42,880.88 Da | 47.36 | 87.75 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 218 | 330 | 8.9E-15 | IPR006527 |
| Pfam | PF00646 | F-box domain | 12 | 47 | 5.1E-10 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 82 | 2.49E-12 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 181 | 351 | 3.92E-11 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 51 | 2.4E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 160 | 352 | 2.5E-9 | IPR015915 |
| SMART | SM00256 | fbox_2 | 12 | 52 | 1.3E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 106 | 311 | 4.4E-22 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 6 | 51 | 11.537539 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11270.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_033142692.1 | F-box protein At1g11270 [Brassica rapa] | 0 |
| Q7X7A9 | F-box protein At1g11270 OS=Arabidopsis thaliana OX=3702 GN=At1g11270 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7NTA1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092523 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 15 | AT1G09650.1, AT1G11270.1, AT1G12490.1, AT1G12855.1 ... |
| Brassicaceae | Eutrema salsugineum | 30 | Thhalv10000283m.g.v1.0, Thhalv10002950m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 4 | Sp1g27610.v2.2, Sp2g14700.v2.2, Sp6g09040.v2.2 ... |
| Brassicaceae | Brassica nigra | 27 | BniB01g008490.2N, BniB02g006100.2N, BniB02g006160.2N ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035511 |