Basic Information
Locus ID:
BniB05g015470.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 7341248 | 7345762 | - | BniB05g015470.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 95,265.52 Da | 54.65 | 77.84 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 257 | 369 | 9.24325E-21 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 259 | 373 | 1.5E-6 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 749 | 812 | 5.7E-6 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 619 | 681 | 3.5E-5 | IPR014720 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 747 | 816 | 1.98E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 616 | 682 | 4.8E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 141 | 392 | 4.04E-16 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 143 | 412 | 1.4E-24 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 748 | 816 | 8.2E-8 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 606 | 683 | 1.3E-5 | - |
| SMART | SM00577 | forpap2 | 206 | 383 | 3.4E-22 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 748 | 816 | 0.0011 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 618 | 682 | 2.2E-7 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 147 | 395 | 12.546981 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 617 | 683 | 11.188538 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 747 | 817 | 11.237091 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 725 | 745 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 597 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_018469188.1 | PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Raphanus sativus] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7NTR5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092519 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology