Basic Information
Locus ID:
BniB05g015180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Proteinaceous RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 7197558 | 7200227 | + | BniB05g015180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 64,189.31 Da | 44.77 | 84.67 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18671 | PIN_PRORP-Zc3h12a-like | 402 | 528 | 1.88752E-60 | - |
| Pfam | PF16953 | Protein-only RNase P | 338 | 573 | 6.7E-60 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 83 | 295 | 1.8E-80 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 92 | 574 | 2.4E-216 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 355 | 539 | 2.4E-216 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 90 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 90 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21900.1 | proteinaceous RNase P 3. | 0 |
| RefSeq | XP_018451068.1 | PREDICTED: proteinaceous RNase P 3 [Raphanus sativus] | 0 |
| F4JKB6 | Proteinaceous RNase P 3 OS=Arabidopsis thaliana OX=3702 GN=PRORP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TEJ5 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092009 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology