Basic Information
Locus ID:
BniB05g014200.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Agamous-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 6747758 | 6750834 | + | BniB05g014200.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 25,231.43 Da | 52.63 | 81.63 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 70 | 2.41371E-41 | IPR033896 |
| Pfam | PF01486 | K-box region | 85 | 170 | 6.0E-24 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 8.1E-26 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 73 | 1.57E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 93 | 2.5E-27 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 8.9E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 86 | 176 | 14.700684 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 31.636841 | IPR002100 |
| ProSitePatterns | PS00350 | MADS-box domain signature. | 3 | 57 | - | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.6E-30 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.6E-30 | IPR002100 |
| Coils | Coil | Coil | 120 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22950.1 | AGAMOUS-like 19. MADS-box protein AGL19 | 0 |
| RefSeq | XP_048596920.1 | agamous-like MADS-box protein AGL19 [Brassica napus] | 0 |
| O82743 | Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7NUQ7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_090757 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology