Basic Information
Locus ID:
BniB05g012640.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase 16-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 5964624 | 5969552 | + | BniB05g012640.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.25 | 111,642.50 Da | 57.16 | 75.08 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 549 | 852 | 4.3E-49 | IPR001394 |
| Pfam | PF01753 | MYND finger | 74 | 111 | 4.9E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 545 | 860 | 2.55E-85 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 71 | 113 | 1.27E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 65 | 115 | 4.3E-11 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 541 | 859 | 7.0E-93 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 549 | 855 | 50.245796 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 74 | 111 | 11.61131 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 74 | 111 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 550 | 565 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 874 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 966 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 970 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1002 | 1018 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 357 | - | - |
| Coils | Coil | Coil | 38 | 58 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_009138224.1 | ubiquitin carboxyl-terminal hydrolase 16 [Brassica rapa] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P084 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094713 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology