Basic Information
Locus ID:
BniB05g012490.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
AFC2
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 5898242 | 5903012 | + | BniB05g012490.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 90,824.89 Da | 46.38 | 83.66 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07396 | MPP_Nbla03831 | 491 | 780 | 1.82733E-115 | IPR041869 |
| CDD | cd14134 | PKc_CLK | 83 | 403 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 96 | 338 | 3.4E-43 | IPR000719 |
| Pfam | PF00149 | Calcineurin-like phosphoesterase | 491 | 740 | 6.5E-15 | IPR004843 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 83 | 381 | 3.37E-69 | IPR011009 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 489 | 791 | 1.04E-66 | IPR029052 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 150 | 377 | 1.1E-101 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 83 | 176 | 1.1E-101 | - |
| Gene3D | G3DSA:3.60.21.10 | - | 486 | 786 | 1.1E-112 | IPR029052 |
| SMART | SM00220 | serkin_6 | 96 | 409 | 1.8E-59 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 96 | 379 | 32.654499 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 217 | 229 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24740.1 | FUS3-complementing gene 2. a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. | 0 |
| RefSeq | XP_013601814.1 | PREDICTED: serine/threonine-protein kinase AFC2 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| P51567 | Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana OX=3702 GN=AFC2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816R7I5 | Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase OS=Brassica napus OX=3708 GN=DARMORV10_C01P20050.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology