Basic Information
Locus ID:
BniB05g011830.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
MADS-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 5664706 | 5667114 | + | BniB05g011830.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 24,932.58 Da | 51.63 | 86.76 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 68 | 2.67616E-39 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 1.7E-25 | IPR002100 |
| Pfam | PF01486 | K-box region | 84 | 175 | 1.7E-16 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 70 | 6.02E-30 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 86 | 3.1E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.9E-39 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 88 | 181 | 11.056428 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.739702 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 3.4E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 3.4E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 3.4E-28 | IPR002100 |
| Coils | Coil | Coil | 144 | 164 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51860.2 | K-box region and MADS-box transcription factor family protein . | 0 |
| RefSeq | XP_033134817.1 | MADS-box protein AGL72 [Brassica rapa] | 0 |
| Q9FLH5 | MADS-box protein AGL72 OS=Arabidopsis thaliana OX=3702 GN=AGL72 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7TK82 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_093441 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology