Basic Information
Locus ID:
BniB05g011810.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 5651530 | 5655818 | + | BniB05g011810.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 59,363.51 Da | 31.94 | 95.74 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04670 | Nudix_Hydrolase_12 | 360 | 491 | 3.68272E-67 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 108 | 142 | 0.0041 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 71 | 103 | 0.045 | IPR001680 |
| Pfam | PF00293 | NUDIX domain | 360 | 482 | 6.7E-20 | IPR000086 |
| Pfam | PF18290 | Nudix hydrolase domain | 269 | 347 | 4.0E-29 | IPR040618 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 245 | 3.85E-36 | IPR036322 |
| SUPERFAMILY | SSF55811 | Nudix | 327 | 484 | 7.18E-33 | IPR015797 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 251 | 2.0E-33 | IPR015943 |
| Gene3D | G3DSA:3.40.630.30 | - | 267 | 352 | 8.0E-30 | - |
| Gene3D | G3DSA:3.90.79.10 | Nucleoside Triphosphate Pyrophosphohydrolase | 361 | 496 | 1.5E-32 | - |
| SMART | SM00320 | WD40_4 | 106 | 143 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 230 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 22 | 59 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 66 | 103 | 0.044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 147 | 190 | 32.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 73 | 106 | 9.09833 | - |
| ProSiteProfiles | PS51462 | Nudix hydrolase domain profile. | 359 | 489 | 16.837074 | IPR000086 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 73 | 112 | 11.912015 | IPR001680 |
| ProSitePatterns | PS00893 | Nudix box signature. | 396 | 417 | - | IPR020084 |
| PRINTS | PR01356 | Anti-sense to fibroblast growth factor protein GFG signature | 319 | 337 | 3.2E-7 | IPR003293 |
| PRINTS | PR01356 | Anti-sense to fibroblast growth factor protein GFG signature | 341 | 357 | 3.2E-7 | IPR003293 |
| PRINTS | PR01356 | Anti-sense to fibroblast growth factor protein GFG signature | 445 | 469 | 3.2E-7 | IPR003293 |
| PRINTS | PR01356 | Anti-sense to fibroblast growth factor protein GFG signature | 357 | 375 | 3.2E-7 | IPR003293 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25434.10 | - | 0 |
| RefSeq | XP_048598028.1 | nudix hydrolase 10 isoform X6 [Brassica napus] | 0 |
| Q6NPD7 | Nudix hydrolase 10 OS=Arabidopsis thaliana OX=3702 GN=NUDT10 PE=1 SV=1 | 0 | |
| TrEMBL | D7MG04 | Zinc finger CCCH domain-containing protein 48-like OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_329122 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology