Basic Information
Locus ID:
BniB05g010710.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
glycerophosphodiester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 5189188 | 5192196 | + | BniB05g010710.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 82,359.23 Da | 34.32 | 85.72 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 357 | 658 | 0.0 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 41 | 340 | 3.30546E-176 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 363 | 652 | 3.1E-26 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 357 | 659 | 1.86E-44 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 41 | 338 | 2.88E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 40 | 340 | 6.3E-37 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 357 | 659 | 1.0E-43 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 41 | 341 | 42.157188 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 357 | 659 | 47.224129 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 729 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_018470772.1 | PREDICTED: glycerophosphodiester phosphodiesterase GDPDL3 [Raphanus sativus] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A8X7TQS1 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089724 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology