Basic Information
Locus ID:
BniB05g009260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4509590 | 4510177 | + | BniB05g009260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.31 | 22,395.44 Da | 57.90 | 70.82 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 19 | 75 | 3.9482E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 21 | 73 | 7.1E-10 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 79 | 3.53E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 87 | 2.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 21 | 73 | 2.5E-11 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 21 | 74 | 12.99088 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 36 | 45 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28270.1 | RING membrane-anchor 2. Encodes a RING finger E3 ubiquitin ligase. Binds and ubiquitinates ABP1 in vivo and in vitro. | 0 |
| RefSeq | XP_009144301.1 | E3 ubiquitin-protein ligase RMA2 isoform X2 [Brassica rapa] | 0 |
| P93030 | E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TG44 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology