Basic Information
Locus ID:
BniB05g008910.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4360317 | 4363430 | + | BniB05g008910.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 110,749.79 Da | 32.64 | 105.07 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 165 | 187 | 0.02 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 702 | 973 | 1.2E-46 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 525 | 584 | 1.8E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 68 | 1.5E-9 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 698 | 976 | 2.46E-70 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 421 | 517 | 3.32E-14 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 66 | 174 | 2.75E-15 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 144 | 589 | 5.18E-62 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 359 | 620 | 9.9E-74 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 700 | 784 | 3.1E-19 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 280 | 358 | 3.1E-21 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 785 | 1003 | 1.2E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 179 | 279 | 2.0E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 178 | 8.2E-36 | IPR032675 |
| SMART | SM00220 | serkin_6 | 700 | 976 | 5.5E-32 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 259 | 283 | 330.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 307 | 330 | 380.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 117 | 130.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 331 | 355 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 547 | 571 | 28.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 163 | 186 | 12.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 427 | 451 | 42.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 65.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 700 | 983 | 38.534245 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 828 | 840 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 706 | 730 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 502 | 515 | 2.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 547 | 560 | 2.6E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 977 | 998 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28650.1 | Leucine-rich repeat transmembrane protein kinase family protein. | 0 |
| RefSeq | XP_048637769.1 | MDIS1-interacting receptor like kinase 1 [Brassica napus] | 0 |
| Q9M0G7 | MDIS1-interacting receptor like kinase 1 OS=Arabidopsis thaliana OX=3702 GN=MIK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7P2C8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094443 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology