Basic Information
Locus ID:
BniB05g008890.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
cysteine-rich receptor-like protein kinase 43
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4354461 | 4356871 | - | BniB05g008890.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.86 | 68,305.92 Da | 48.53 | 84.07 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 148 | 233 | 6.2E-9 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 46 | 126 | 1.3E-9 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 315 | 588 | 5.7E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 297 | 606 | 1.75E-75 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 142 | 235 | 7.9E-12 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 390 | 596 | 3.8E-56 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 276 | 389 | 4.9E-32 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 27 | 128 | 8.7E-15 | IPR038408 |
| SMART | SM00220 | serkin_6 | 314 | 596 | 1.0E-34 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 133 | 235 | 13.447345 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 314 | 606 | 37.50246 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 27 | 128 | 15.094827 | IPR002902 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 320 | 342 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 433 | 445 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28670.1 | Protein kinase family protein with domain of unknown function (DUF26). | 0 |
| RefSeq | XP_018467779.1 | PREDICTED: putative cysteine-rich receptor-like protein kinase 43 [Raphanus sativus] | 0 |
| Q9M0G5 | Cysteine-rich receptor-like protein kinase 46 OS=Arabidopsis thaliana OX=3702 GN=CRK46 PE=3 SV=1 | 0 | |
| TrEMBL | A0A8X7P3U8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094445 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology