Basic Information
Locus ID:
BniB05g008660.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin protein ligase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4247021 | 4248292 | + | BniB05g008660.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 48,723.53 Da | 63.86 | 74.18 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 126 | 169 | 9.67301E-20 | - |
| Pfam | PF13639 | Ring finger domain | 126 | 169 | 4.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 175 | 6.13E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 178 | 1.5E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 168 | 7.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 169 | 12.592549 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 317 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 317 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018468400.1 | PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Raphanus sativus] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X7NVJ2 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091103 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology