Basic Information
Locus ID:
BniB05g008650.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Short Name:
NINJA
Description:
AFP homolog 2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4243993 | 4245363 | + | BniB05g008650.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 44,897.34 Da | 48.35 | 52.49 | -0.73 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 391 | 411 | 2.9E-5 | IPR032308 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 210 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28910.1 | novel interactor of JAZ. | 0 |
| RefSeq | XP_009129161.1 | AFP homolog 2 isoform X2 [Brassica rapa] | 0 |
| Q9SV55 | AFP homolog 2 OS=Arabidopsis thaliana OX=3702 GN=AFPH2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TH62 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091098 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32994 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9107 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah014596 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g197080 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25035, Sbi_jg8883 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007755 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl42272, Sgl47048 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009698, gene:ENSEOMG00000034558 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.8AG0019720, CQ.Regalona.r1.8BG0022690 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30256970, pistato.v30287330 |
| Apiaceae | Apium graveolens | 1 | Ag5G01574 |
| Arecaceae | Cocos nucifera | 3 | contig68859002G000010, scaffold040224G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709495, gene-LOC103715573 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.465.V1.1, AsparagusV1_05.1948.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G21743 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28910.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025262m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26880.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g083790.2N, BniB05g008650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1536 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1590 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g02520 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g16060 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-144 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.1127 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00003899 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb4G23273, Lb5G29585, Lb5G29587 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.1435, BH05.1605, CH05.1807 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0363610, gene-QOZ80_5BG0411740 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0086350.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_015547 |
| Poaceae | Oryza coarctata | 2 | Oco09G016520, Oco10G016350 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g48500.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G195900, gene-BS78_09G231800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0505755 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G015450, Chr12G021350, Chr18G017210, Chr22G001570 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G225600, Tel2E01G225700, Tel4E01G165900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG057240, gene_TRIDC2BG015070 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1A02G389500.1, TraesCS1D02G397600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb343360_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13699, nbis-gene-24888 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g27360, Zma_g28778 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2867, evm.TU.LG23.1069 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g07250 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.443 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-13083 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4970 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16844 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000033l.303 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014675 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-22713, nbisL1-mrna-4077 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8261 |
| Salicaceae | Populus euphratica | 2 | populus_peu05617, populus_peu09178 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132641083 |
| Solanaceae | Solanum chilense | 1 | SOLCI003483300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107020672 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3940_chr02_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1306 |
| Zosteraceae | Zostera marina | 6 | Zosma01g14130.v3.1, Zosma01g14230.v3.1, Zosma02g13690.v3.1 ... |