Basic Information
Locus ID:
BniB05g008450.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4180126 | 4181521 | + | BniB05g008450.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.07 | 32,801.65 Da | 45.90 | 64.43 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 53 | 289 | 3.2E-86 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 171 | 279 | 1.18E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 173 | 292 | 1.1E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 178 | 280 | 24.828148 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 173 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_013599813.1 | PREDICTED: auxin-responsive protein IAA27 [Brassica oleracea var. oleracea] | 0 |
| Q9ZSY8 | Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7NTX9 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_091081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology