Basic Information
Locus ID:
BniB05g008260.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4030560 | 4031503 | - | BniB05g008260.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 26,218.40 Da | 31.30 | 73.54 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF117281 | Kelch motif | 92 | 208 | 1.96E-12 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 87 | 219 | 2.3E-5 | IPR015915 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39560.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_013593785.1 | PREDICTED: F-box/kelch-repeat protein At5g39560-like [Brassica oleracea var. oleracea] | 0 |
| Q6NL02 | F-box/kelch-repeat protein At5g39560 OS=Arabidopsis thaliana OX=3702 GN=At5g39560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9SSB9 | F-box domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00033244 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39560.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10017575m.g.v1.0, Thhalv10026834m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB02g084270.2N, BniB05g008250.2N, BniB05g008260.2N |