Basic Information
Locus ID:
BniB05g008250.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 4028642 | 4029817 | - | BniB05g008250.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 44,743.66 Da | 45.57 | 74.48 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 129 | 167 | 2.1E-9 | IPR006652 |
| Pfam | PF00646 | F-box domain | 21 | 65 | 1.0E-7 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 179 | 213 | 2.0E-8 | IPR006652 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 94 | 1.7E-8 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 72 | 372 | 6.8E-38 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 90 | 336 | 1.5E-23 | IPR015915 |
| SMART | SM00612 | kelc_smart | 136 | 181 | 9.2E-7 | IPR006652 |
| SMART | SM00256 | fbox_2 | 25 | 65 | 1.5E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 182 | 237 | 7.2 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 19 | 65 | 11.00765 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G39560.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_018469780.1 | PREDICTED: F-box/kelch-repeat protein At5g39560-like [Raphanus sativus] | 0 |
| Q6NL02 | F-box/kelch-repeat protein At5g39560 OS=Arabidopsis thaliana OX=3702 GN=At5g39560 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7TI33 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_095549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G39560.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10017575m.g.v1.0, Thhalv10026834m.g.v1.0 ... |
| Brassicaceae | Brassica nigra | 3 | BniB02g084270.2N, BniB05g008250.2N, BniB05g008260.2N |