Basic Information
Locus ID:
BniB05g007940.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
protein N-linked glycosylation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 3928360 | 3932849 | + | BniB05g007940.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 53,226.15 Da | 45.12 | 80.81 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03107 | C1 domain | 268 | 315 | 6.8E-7 | IPR004146 |
| Pfam | PF05251 | Oligosaccharyltransferase subunit 5 | 395 | 467 | 4.2E-21 | IPR007915 |
| Pfam | PF03107 | C1 domain | 216 | 258 | 3.1E-12 | IPR004146 |
| Pfam | PF03107 | C1 domain | 60 | 105 | 5.3E-12 | IPR004146 |
| Pfam | PF03107 | C1 domain | 155 | 203 | 2.6E-11 | IPR004146 |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 208 | 271 | 1.29E-17 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 32 | 111 | 2.65E-19 | - |
| SUPERFAMILY | SSF57889 | Cysteine-rich domain | 130 | 209 | 7.48E-15 | - |
| Gene3D | G3DSA:3.30.60.20 | - | 8 | 57 | 6.3E-6 | - |
| SMART | SM00109 | c1_12 | 9 | 58 | 0.58 | IPR002219 |
| SMART | SM00109 | c1_12 | 217 | 263 | 0.37 | IPR002219 |
| SMART | SM00109 | c1_12 | 160 | 208 | 0.31 | IPR002219 |
| SMART | SM00109 | c1_12 | 60 | 110 | 0.14 | IPR002219 |
| ProSiteProfiles | PS50081 | Zinc finger phorbol-ester/DAG-type profile. | 8 | 57 | 8.6598 | IPR002219 |
Gene Ontology
Biological Process:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01930.1 | Cysteine/Histidine-rich C1 domain family protein. | 0 |
| RefSeq | XP_033128644.1 | uncharacterized protein LOC103853328 [Brassica rapa] | 0 |
| E2RKN8 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit TMEM258 OS=Canis lupus familiaris OX=9615 GN=TMEM258 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P6FLQ0 | Phorbol-ester/DAG-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC1T00933H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg35663, jg8188, jg8412, jg8450, jg8451, jg8457 |
| Apiaceae | Apium graveolens | 5 | Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874 |
| Asteraceae | Flaveria trinervia | 12 | Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... |
| Brassicaceae | Arabidopsis thaliana | 35 | AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... |
| Brassicaceae | Eutrema salsugineum | 34 | Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 5 | Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... |
| Brassicaceae | Brassica nigra | 39 | BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 17 | Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... |
| Casuarinaceae | Casuarina glauca | 23 | Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 6 | nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17998 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17876 |
| Salicaceae | Populus euphratica | 4 | populus_peu26078, populus_peu26197, populus_peu26198 ... |