Basic Information
Locus ID:
BniB05g007180.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 3558144 | 3560915 | + | BniB05g007180.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 71,372.01 Da | 43.46 | 100.81 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 126 | 186 | 4.9E-10 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 305 | 569 | 1.1E-41 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 75 | 9.5E-13 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 286 | 574 | 3.83E-73 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 36 | 280 | 1.47E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 381 | 592 | 6.4E-59 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 273 | 380 | 7.0E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 217 | 8.2E-54 | IPR032675 |
| SMART | SM00220 | serkin_6 | 304 | 573 | 2.3E-31 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 304 | 591 | 35.142082 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 310 | 332 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 423 | 435 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 128 | 141 | 6.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 173 | 186 | 6.6E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G30520.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_018445242.1 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 isoform X1 [Raphanus sativus] | 0 |
| Q8VYT3 | Probable LRR receptor-like serine/threonine-protein kinase At4g30520 OS=Arabidopsis thaliana OX=3702 GN=At4g30520 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7TKI8 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_092726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology