Basic Information
Locus ID:
BniB05g006290.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 3170179 | 3172980 | + | BniB05g006290.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 67,115.46 Da | 62.29 | 72.46 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 128 | 433 | 1.3965E-169 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 129 | 432 | 2.2E-40 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 126 | 447 | 8.83E-85 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 124 | 446 | 4.7E-89 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 129 | 435 | 48.443317 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 130 | 145 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 549 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 580 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31670.1 | ubiquitin-specific protease 18. | 0 |
| RefSeq | XP_013587652.1 | PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Brassica oleracea var. oleracea] | 0 |
| Q67XW5 | Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana OX=3702 GN=UBP18 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8X7TJB6 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_094924 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology