Basic Information
Locus ID:
BniB05g006130.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
Has 114836 Blast hits to 56273 proteins in 1914 species Archae - 187
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 3103296 | 3108271 | + | BniB05g006130.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 90,052.63 Da | 57.02 | 60.94 | -1.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 19 | 235 | 1.54E-7 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 646 | 687 | 2.61E-7 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 645 | 695 | 1.4E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 445 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 502 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 553 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 637 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 444 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 700 | 831 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_018472472.1 | PREDICTED: neurofilament heavy polypeptide-like isoform X5 [Raphanus sativus] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6J0MJ12 | neurofilament heavy polypeptide-like isoform X5 OS=Raphanus sativus OX=3726 GN=LOC108843710 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology