halophFGD

Basic Information

Locus ID: BniB05g005620.2N

Species & Taxonomic ID: Brassica nigra & 3710

Genome Assembly: N100

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
B5	2897239	2898897	-	BniB05g005620.2N

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.31	61,565.45 Da	43.45	74.00	-0.44

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01535	PPR repeat	167	190	0.083	IPR002885
Pfam	PF01535	PPR repeat	263	291	0.0059	IPR002885
Pfam	PF01535	PPR repeat	232	260	0.034	IPR002885
Pfam	PF14432	DYW family of nucleic acid deaminases	432	541	5.1E-26	IPR032867
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	164	322	1.8E-22	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	263	295	1.1E-5	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	260	294	10.358486	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	131	159	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G32450.1	Pentatricopeptide repeat (PPR) superfamily protein.
RefSeq	XP_018463222.1	PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial [Raphanus sativus]
Swiss-Prot	Q9SUU7	Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H63 PE=2 SV=1
TrEMBL	A0A8X7TRU0	Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_089504 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11928, jg17978, jg28682
Amaranthaceae	Atriplex hortensis	2	Ah016922, Ah035473
Amaranthaceae	Beta vulgaris	2	BVRB_2g026760, BVRB_7g158630
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg16535, Sbi_jg21898, Sbi_jg29540, Sbi_jg61058
Amaranthaceae	Salicornia europaea	2	Seu_jg15850, Seu_jg22817
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00008484, GOSA_00020591
Amaranthaceae	Suaeda glauca	6	Sgl14623, Sgl14658, Sgl19826, Sgl63150, Sgl63285, Sgl67764
Amaranthaceae	Chenopodium album	7	gene:ENSEOMG00000010815, gene:ENSEOMG00000018661 ... gene:ENSEOMG00000021178, gene:ENSEOMG00000029189, gene:ENSEOMG00000032806, gene:ENSEOMG00000045641, gene:ENSEOMG00000050465
Amaranthaceae	Chenopodium quinoa	3	CQ.Regalona.r1.2BG0021120, CQ.Regalona.r1.8AG0007470 ... CQ.Regalona.r1.8BG0007710
Anacardiaceae	Pistacia vera	2	pistato.v30252580, pistato.v30266050
Apiaceae	Apium graveolens	3	Ag10G02934, Ag5G01682, Ag6G02444
Arecaceae	Cocos nucifera	2	COCNU_05G006810, COCNU_06G004840
Arecaceae	Phoenix dactylifera	3	gene-LOC103703367, gene-LOC103721816, gene-LOC120111010
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.833.V1.1, AsparagusV1_03.113.V1.1 ... AsparagusV1_04.3101.V1.1, AsparagusV1_05.2923.V1.1
Asteraceae	Flaveria trinervia	3	Ftri14G11792, Ftri3G25911, Ftri8G13403
Brassicaceae	Arabidopsis thaliana	5	AT1G29710.1, AT2G15690.1, AT2G25580.1, AT2G34370.1 ... AT4G32450.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10000083m.g.v1.0, Thhalv10002347m.g.v1.0 ... Thhalv10010282m.g.v1.0, Thhalv10017960m.g.v1.0, Thhalv10022696m.g.v1.0, Thhalv10024867m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp3g28930.v2.2, Sp4g04980.v2.2, Sp5g08390.v2.2 ... Sp7g30240.v2.2
Brassicaceae	Brassica nigra	6	BniB02g012270.2N, BniB02g024000.2N, BniB03g044320.2N ... BniB05g005620.2N, BniB05g018660.2N, BniB06g065730.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2310, Ceq07G2155
Casuarinaceae	Casuarina glauca	2	Cgl04G2512, Cgl07G2385
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g12390, gene.Cymno09g07370
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g12800, gene.Thate03g05310
Nitrariaceae	Nitraria sibirica	4	evm.TU.LG03.2581, evm.TU.LG06.518, evm.TU.LG06.969 ... evm.TU.LG07.1212
Plantaginaceae	Plantago ovata	3	Pov_00013971, Pov_00032916, Pov_00035357
Plumbaginaceae	Limonium bicolor	1	Lb1G05018
Poaceae	Echinochloa crus-galli	7	AH02.3105, AH07.3300, BH02.3178, BH05.1186, CH01.2673 ... CH05.1524, CH07.3188
Poaceae	Eleusine coracana subsp. coracana	3	gene-QOZ80_5AG0361190, gene-QOZ80_5BG0409610 ... gene-QOZ80_5BG0415660
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094040.1.CDS1 ... HORVU.MOREX.r3.3HG0287400.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015107, gene-QYE76_055368
Poaceae	Oryza coarctata	4	Oco01G019670, Oco02G020140, Oco07G000150, Oco08G001340
Poaceae	Oryza sativa	3	LOC_Os01g53610.1, LOC_Os02g05800.1, LOC_Os04g09530.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G269300, gene-BS78_09G256800, gene-BS78_K136900
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0604933, Pt_Chr0605236
Poaceae	Sporobolus alterniflorus	8	Chr02G010230, Chr04G005840, Chr05G006070, Chr05G023160 ... Chr08G015780, Chr0G005990, Chr18G015990, Chr22G000050
Poaceae	Thinopyrum elongatum	2	Tel1E01G731600, Tel3E01G459400
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG063620, gene_TRIDC1BG072850 ... gene_TRIDC3AG041330, gene_TRIDC3BG046620
Poaceae	Triticum aestivum	6	TraesCS1A02G433400.1.cds1, TraesCS1B02G469300.1.cds1 ... TraesCS1D02G443000.1.cds1, TraesCS3A02G278400.1, TraesCS3B02G312600.1, TraesCS3D02G278700.1
Poaceae	Zea mays	3	Zm00001eb153890_P001, Zm00001eb297450_P001 ... Zm00001eb345230_P002
Poaceae	Zoysia japonica	1	nbis-gene-24710
Poaceae	Zoysia macrostachya	2	Zma_g28915, Zma_g8604
Portulacaceae	Portulaca oleracea	2	evm.TU.LG13.231, evm.TU.LG14.1833
Posidoniaceae	Posidonia oceanica	3	gene.Posoc04g06060, gene.Posoc08g00950, gene.Posoc10g06760
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_11_RagTag.105, evm.TU.Scaffold_1_RagTag.2103 ... evm.TU.Scaffold_2_RagTag.309, evm.TU.Scaffold_4_RagTag.1852
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-4881, nbisL1-mrna-7192
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-16958, nbisL1-mrna-5090
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-14473, nbisL1-mrna-3432, nbisL1-mrna-4636 ... nbisL1-mrna-9829
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000005l.133, add.evm.TU.utg000008l.400 ... add.evm.TU.utg000009l.280, add.evm.TU.utg000016l.80
Rhizophoraceae	Kandelia obovata	2	Maker00000315, Maker00005524
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-14832, nbisL1-mrna-16882, nbisL1-mrna-17708
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-22036, nbisL1-mrna-6077
Salicaceae	Populus euphratica	2	populus_peu27387, populus_peu33708
Solanaceae	Lycium barbarum	4	gene-LOC132599047, gene-LOC132600830, gene-LOC132620301 ... gene-LOC132642075
Solanaceae	Solanum chilense	3	SOLCI002114100, SOLCI004114400, SOLCI005040000
Solanaceae	Solanum pennellii	3	gene-LOC107005583, gene-LOC107018492, gene-LOC107026572
Tamaricaceae	Reaumuria soongarica	3	STRG.2821_chr02_-, STRG.9762_chr06_-, gene_14860
Tamaricaceae	Tamarix chinensis	3	TC01G4056, TC12G1188, TC12G1968
Zosteraceae	Zostera marina	2	Zosma01g32350.v3.1, Zosma03g03220.v3.1