Basic Information
Locus ID:
BniB05g005540.2N
Species & Taxonomic ID:
Brassica nigra & 3710
Genome Assembly:
N100
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| B5 | 2869513 | 2873022 | + | BniB05g005540.2N |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 87,651.75 Da | 44.57 | 90.90 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 41 | 80 | 7.8E-4 | IPR001680 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 241 | 680 | 1.1E-16 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 11 | 416 | 2.93E-37 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 98 | 5.0E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 104 | 308 | 1.7E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 739 | 3.4E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 531 | 569 | 95.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 476 | 517 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 572 | 614 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 37 | 80 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 179 | 217 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 174 | 96.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 232 | 271 | 0.0038 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 239 | 280 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 44 | 89 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 44 | 82 | 9.335602 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 239 | 272 | 9.968326 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 67 | 81 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26480.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_048601173.1 | WD repeat-containing protein 75 isoform X1 [Brassica napus] | 0 |
| Q6DFC6 | WD repeat-containing protein 75 OS=Xenopus laevis OX=8355 GN=wdr75 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816R6C0 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C01P06460.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20577 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_9560 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah016077 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g139420 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg25763, Sbi_jg9590 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg19050 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020491 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl43894, Sgl48663 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000010905, gene:ENSEOMG00000032463 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8AG0010420 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30263260 |
| Apiaceae | Apium graveolens | 1 | Ag3G02399 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G008960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721350 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3179.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26605 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G18900.1, AT3G26480.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022562m.g.v1.0, Thhalv10024453m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32370.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g067880.2N, BniB05g005540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1080 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1167 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno08g02400, gene.Cymno17g04000 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0661s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g19760 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-24 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.1100 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00006248, Pov_00031801 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18224 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.4018, BH05.4110, CH05.4333 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0397570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0430390.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_000887 |
| Poaceae | Oryza coarctata | 2 | Oco23G010140, Oco24G009980 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g41620.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G140500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0704371 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018830, Chr06G019690, Chr19G007840, Chr27G008840 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G112600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG007760, gene_TRIDC5BG009220 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G049800.1, TraesCS5B02G055400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb031520_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44547 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25316 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1081, evm.TU.LG22.824 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g05880 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2048 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-25451 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7835 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4813 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1195 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001268 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14265 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20958 |
| Salicaceae | Populus euphratica | 3 | populus_peu05426, populus_peu12043, populus_peu12045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616850 |
| Solanaceae | Solanum chilense | 1 | SOLCI004294700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026497 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15415_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1403 |
| Zosteraceae | Zostera marina | 1 | Zosma03g23990.v3.1 |